刘峰实验室

Publications

    * First author
    # Corresponding author

  1. Chowdhry S*, Zanca C, Rajkumar U, Koga T, Diao Y, Raviram R, Liu F, Turner K, Yang H, Brunk E, Bi J, Furnari F, Bafna V, Ren B, Mischel PS# NAD metabolic dependency in cancer is shaped by gene amplification and enhancer remodelling. Nature. 2019 Apr 24. Pubmed

  2. Zhang X*, Li T*, Liu F*, Chen Y*, Li Z, Huang Y , Wang J. Comparative analysis of droplet-based ultra-high-throughput single-cell RNA-seq systems. Molecular Cell. 2018 Nov 21. Pubmed

  3. Tang Y, Xiong S, Yu P, Liu F#, Cheng L#. Direct Conversion of Mouse Fibroblasts into Neural Stem Cells by Chemical Cocktail Requires Stepwise Activation of Growth Factors and Nup210. Cell Reports. 2018 July 31; 24(5): 1355-1362.E3. doi:https://doi.org/10.1016/j.celrep.2018.06.116. Pubmed

  4. Ma Z, Wang H, Cai Y, Wang H, Niu K, Wu X, Ma H, Yang Y, Tong W, Liu F, Liu Z, Zhang Y, Liu R, Zhu ZJ, Liu N Epigenetic Drift of H3K27me3 in Aging Links Glycolysis to Healthy Longevity. Elife. 2018 May 29;7. pii: e35368. doi: 10.7554/eLife.35368. Pubmed

  5. Sang Y, Li Y, Song L, Alvarez AA, Zhang W, Lv D, Tang J, Liu F, Chang Z, Hatakeyama S, Hu B, Cheng SY, Feng H. TRIM59 promotes gliomagenesis by inhibiting TC45 dephosphorylation of STAT3. Cancer Research. 2018 Apr 1;78(7):1792-1804. doi: 10.1158/0008-5472.CAN-17-2774. Pubmed

  6. Ji MM, Huang YH, Huang JY, Wang ZF, Fu D, Liu H, Liu F, Leboeuf C, Wang L, Ye J, Lu YM, Janin A, Cheng S, Zhao WL. Histone Modifier Gene Mutations in Peripheral T-cell Lymphoma Not Otherwise Specified. Haematologica. 2018 Apr;103(4):679-687. doi: 10.3324/haematol.2017.182444. Pubmed

  7. Liu F*#, Mischel PS#. Targeting EGFR Co-dependent Signaling Pathways in Glioblastoma. Wiley Interdisciplinary Reviews: Systems Biology and Medicine. 2018 Jan;10(1). doi: 10.1002/wsbm.1398. Pubmed

  8. Zanca C, Villa GR, Benitez JA, Thorne AH, Koga T, D'Antonio M, Ikegami S, Ma J, Boyer AD, Banisadr A, Jameson NM, Parisian AD, Eliseeva OV, Barnabe GF, Liu F, Wu S, Yang H, Wykosky J, Frazer KA, Verkhusha VV, Isaguliants MG, Weiss WA, Gahman TC, Shiau AK, Chen CC, Mischel PS, Cavenee WK, Furnari FB#. Glioblastoma Cellular Crosstalk Converges on NF-kB to Attenuate EGFR Inhibitor Sensitivity. Genes & Development. 2017 Jun 15;31(12):1212-1227. doi: 10.1101/gad.300079.117. Pubmed

  9. Liu F*#. Enhancer-derived RNA: A Primer. Genomics, Proteomics & Bioinformatics. 2017 Jun;15(3):196-200. doi: 10.1016/j.gpb.2016.12.006. Pubmed

  10. Liu F*#. Genomic Regulation of microRNA Expression in Development and Disease. (Book Chapter in Bioinformatics in MicroRNA Research. 2017 May 25; Volume 1617 of the series Methods in Molecular Biology pp 159-167. doi: 10.1007/978-1-4939-7046-9_11. Pubmed

  11. Liu F*, Mischel PS, Cavenee WK. Precision Cancer Therapy is Impacted by Oncogene-dependent Epigenome Remodeling. npj Precision Oncology, 2017 Mar 20;1(1):1. doi: 10.1038/s41698-017-0005-2. eCollection 2017. Pubmed

  12. Villa GR, Hulce JJ, Zanca C, Ikegami S, Cahill GL, Gu Y, Bi J, Masui K, Yang H, Rong X, Hong C, Turner K, Liu F, Hon GC, Armando AM, Quehenberger O, Furnari FB, Cavenee WK, Tontonoz P, Gahman TC, Shaiu AK, Cravatt BF, Mischel PS. An LXR-Cholesterol Axis Creates a Metabolic Co-Dependency for Brain Cancers. Cancer Cell, 2016 Oct 13. Pii: S1535-6108(16)30443-3. Pubmed

  13. Liu F*, Hon GC*, Villa GR, Turner KM, Ikegami S, Yang H, Ye Z, Li B, Kuan S, Lee AY, Zanca C, Wei B, Lucey G, Jenkins D, Zhang W, Barr CB, Furnari FB, Cloughesy TF, Yong WH, Gahman TC, Shiau AK, Cavenee WK,, Ren B, Mischel PS. EGFR Mutation Promotes Glioblastoma Through Epigenome and Transcription Factor Network Remodeling. Molecular Cell, 2015 Oct 15; 60(2):307-318. doi: 10.1016/j.molcel.2015.09.002. Epub 2015 Oct 8. Pubmed

  14. Liu, F*, and Posakony, JW. (2014) An Enhancer Composed of Interlocking Sub-modules Controls Transcriptional Autoregulation of Suppressor of Hairless. Developmental Cell. 2014 Apr 14;29(1):88-101. doi: 10.1016/j.devcel.2014.02.005. Pubmed

  15. Masui K, Tanaka K, Akhavan D, Babic I, Gini B, Matsutani T, Iwanami A, Liu F, Villa GR, Gu Y, Campos C, Zhu S, Yang H, Yong WH, Cloughesy TF, Mellinghoff IK, Cavenee WK, Shaw RJ, Mischel PS. mTOR Complex 2 Controls Glycolytic Metabolism in Glioblastoma Through FoxO Acetylation and Upregulation of c-Myc. Cell Metabolism. 2013 Nov 5;18(5):726-39. doi: 10.1016/j.cmet.2013.09.013. Epub 2013 Oct 17. Pubmed

  16. Zheng D, Yang G, Li X, Wang Z, Liu F, He L. An Efficient Algorithm for Computing Attractors of Synchronous and Asynchronous Boolean Networks. PLoS ONE. 2013; 8(4): e60593. doi:10.1371/journal.pone.0060593. Pubmed

  17. Liu F*, Posakony JW. Role of Architecture in the Function and Specificity of Two Notch-regulated Transcriptional Enhancer Modules. PLoS Genetics. 2012; 8(7): e1002796. Pubmed

  18. Rebeiz M, Castro B, Liu F, Yue F, Posakony JW. Ancestral and Conserved Cis-regulatory Architecture in Developmental Control Genes. Development Biology. 2012 Feb 15;362(2):282-94. Pubmed

  19. Lee Y*, Liu F*, Segil N. A Morphogenetic Wave of p27Kip1 Transcription Directs Cell Cycle Exit During Organ of Corti Development. Development. 2006 Aug;133(15):2817-26. Pubmed

  20. Chen P, Zindy F, Abdala C, Liu F, Li X, Roussel MF, Segil N. Progressive Hearing Loss in Mice Lacking the Cyclin-dependent Kinase Inhibitor Ink4d. Nature Cell Biology. 2003 May;5(5):422-6. Pubmed